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The carrier molecule which transports fatty acids through the inner mitochondrial membrane is -- Carnitine
What is Carnitine ?
A small molecule, carnitine, serves as a carrier across the mitochondrial membrane. This pathway requires no chemical energy supply; rather, the fact that the fatty acid in the mitochondrial matrix is being broken down by oxidation drives the process.
How are fatty acids transported into the cell?
Transport of long-chain fatty acids across the cell membrane has long been thought to occur by passive diffusion. However, in recent years there has been a fundamental shift in understanding, and it is now generally recognized that fatty acids cross the cell membrane via a protein-mediated mechanism.
Learn more about mitochondrial membrane :
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